PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005203m
Common NameCICLE_v10005203mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 373aa    MW: 41039.8 Da    PI: 6.5653
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005203mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.51.4e-33193251159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK vk+s++prsYYrCtsagC vkk+vers+edp++v++tYeg+H h+
  Ciclev10005203m 193 LDDGYRWRKYGQKAVKNSPHPRSYYRCTSAGCGVKKRVERSSEDPTIVVTTYEGQHIHP 251
                      59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-35178253IPR003657WRKY domain
SuperFamilySSF1182902.62E-29185253IPR003657WRKY domain
PROSITE profilePS5081133.27188253IPR003657WRKY domain
SMARTSM007744.0E-40193252IPR003657WRKY domain
PfamPF031067.6E-27194251IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEKREAETSI SMANSTLLSD ENPAGGYGLG GIFDMSCEGD KWDAASFGFM DLLNVQNHNT  60
NYNNQDFGGD SFLFSNTLHP PPPAAAPILP PPPPQPSPAP ESSEVLNNPA TPNSSSISSS  120
SNEAAANNTN NEEQTDTNNN NNNNNKNSSS KAGDDDEQEQ DKTKKQLKPK KKNQKKQREP  180
RFAFMTKSDI DHLDDGYRWR KYGQKAVKNS PHPRSYYRCT SAGCGVKKRV ERSSEDPTIV  240
VTTYEGQHIH PSPITPRGSI GIMANDHNST ATFGASSSFV IPQPQYLQLH HQQQPYIYSS  300
SPPLNLITSN ATSTTANSSF NNPTFSSFVH HHQAERRNTM ISPSQASLFH DHGLLQDIVP  360
SQMRNEPKDE HI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-261862531077Probable WRKY transcription factor 4
2lex_A3e-261862531077Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006419357.10.0hypothetical protein CICLE_v10005203mg
SwissprotQ9FGZ45e-63WRK48_ARATH; Probable WRKY transcription factor 48
TrEMBLV4RXW70.0V4RXW7_9R
STRINGPOPTR_0010s15750.12e-97(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56242648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49520.13e-49WRKY DNA-binding protein 48